====== Phantom QC ======
This is the development page for results on [[:data:qc]] (one of [[::data:qa]]) 
https://github.com/NPACore/fw-mrrcqa

Components:
  * EPI: [[:npac:qc:zshim]] [[:npac:qc:tSNR]]
  * Channels: [[:npac:qc:FID]]
  * TTL trigger:  [[:npac:qc:TTL]] ([[:hardware:ttl_bnc]], [[::mr:task:trigger]])

===== Automation =====

The pipeline is convoluted and distributed:
  * flywheel gear rules submmit QC jobs
    * FID FWHM is a file-curate gear ([[https://github.com/NPACore/fw-mrrcqa/blob/main/FID/fwhm.py|fwhm.py]]). as of 2026-02, it is not setup on all 3 projects but instead triggered at 8am by cerebro cron.
    * tSNR is run as a HPC gear, triggered on ingest. hpc-engine + ''*/1'' every-minute-cron on cerebro2 catches this and submits to slurm on it's nodes. Job is run with a singularity container pulled form flywheel.
  * foranw@zeus cron runs catchup (''[[https://github.com/NPACore/fw-mrrcqa/blob/main/helpers/01_flywheel_hpc_mrrcqa.bash|01_flywheel_hpc_mrrcqa.bash]]'')
    * file-curator for ''qa_fid'' and ''svs'' (''ACQ_LABEL='svs_se_30' [[https://github.com/NPACore/fw-mrrcqa/blob/main/FID/fw_run.py|../FID/fw_run.py]]'')
  * foranw@zeus cron generating the QC csv, R plot png, and wiki upload
  * recontwix@recontwix cron generates matlab figure and uploads to wiki
  * recontwix@recontwix cron adds weekly stat to conference room share 
===== Subpages =====
{{simplenavi>:npac:qc}}