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npac:internal_weekly [2026/06/03 12:23] – init forannpac:internal_weekly [2026/06/03 14:01] (current) – after foran
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 ===== 2026-06-03 ===== ===== 2026-06-03 =====
  
 +  * undergrand BME for NM
 +     * Bea and Finn *
   * bids2nda: E Lorenc (brown), Yarik (Dartmouth)   * bids2nda: E Lorenc (brown), Yarik (Dartmouth)
 +     * https://etherpad.opendev.org/p/bids2nda
 +     * case for python: bids library, nda-tools, uvx/pip install
 +  * MRSI -- chan or andrewR  (Finn) *
 +    * phanom paired with sesssion? (inhomo confound)
 +    * rfpulse in empty spectrum. ERCT
   * redcap <-> xnat incidental finding   * redcap <-> xnat incidental finding
 +     * api - small scripts: connect, pull, push (id=0 + force=True is new)
 +     * need to review fields (instruments)
 +     * survey links. then XNAT 
 +     * ppt to questions 
 +     * Jira 
   * protocol QC   * protocol QC
       * exclude seqno > 100       * exclude seqno > 100
       * series number for same sequence name within session (color if before or after error; matches template)       * series number for same sequence name within session (color if before or after error; matches template)
       * xnat tagging       * xnat tagging
-  * MRSI: gam adjust; line width (fwhm) / SNR from LCModel?+  * MRSI: gam adjust;  
 +     * line width (fwhm) / SNR from LCModel? use matching cs.coord FWHM=.... 
 +     * grep FWHM LCModel/v2idxfix/*/csi.coord * L/R Cad. Thal 
 +     * Cr for gam adjusted 
 +     * Samira access to rhea for coords? 
 +     * https://pubs.rsna.org/doi/10.1148/radiol.2402050314 
 +  * neurodesk: containers for OpenRecon; BART  
 +  * mallory on rhea/npac@cerebro2. ask nathan oac_ix_luna
  
  
MRRC Wiki

Table of Contents

  • Onboarding
  • Scanners
    • 3T Prisma 1
    • 3T Prisma 2
    • 3T Prisma 3
    • 7T plus (BST3)
    • 7T Terra.X
  • MRRC MR Data
    • Quality Assurance
    • ReproIn naming convention
    • XNAT
    • Flywheel
    • Filesystem
  • Supporting Hardware
    • Experimental Task PCs
    • Eye Tracking
      • SR Research EyeLink 1000 Plus
      • Avotec Arrington Eye Tracker
  • MR Physics Reports
  • Imaging Notes
    • XNAT vs Gyrus DICOMs
    • Resampling vs Registration
    • MR Task Notes
      • Psychtoolbox
  • NPAC
    • NPAC Support and Services
  • sitemap